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from collections.abc import Callable
from sympy.core.containers import Dict from sympy.utilities.exceptions import sympy_deprecation_warning from sympy.utilities.iterables import is_sequence from sympy.utilities.misc import as_int
from .matrices import MatrixBase from .repmatrix import MutableRepMatrix, RepMatrix
from .utilities import _iszero
from .decompositions import ( _liupc, _row_structure_symbolic_cholesky, _cholesky_sparse, _LDLdecomposition_sparse)
from .solvers import ( _lower_triangular_solve_sparse, _upper_triangular_solve_sparse)
class SparseRepMatrix(RepMatrix): """
A sparse matrix (a matrix with a large number of zero elements).
Examples ========
>>> from sympy import SparseMatrix, ones >>> SparseMatrix(2, 2, range(4)) Matrix([ [0, 1], [2, 3]]) >>> SparseMatrix(2, 2, {(1, 1): 2}) Matrix([ [0, 0], [0, 2]])
A SparseMatrix can be instantiated from a ragged list of lists:
>>> SparseMatrix([[1, 2, 3], [1, 2], [1]]) Matrix([ [1, 2, 3], [1, 2, 0], [1, 0, 0]])
For safety, one may include the expected size and then an error will be raised if the indices of any element are out of range or (for a flat list) if the total number of elements does not match the expected shape:
>>> SparseMatrix(2, 2, [1, 2]) Traceback (most recent call last): ... ValueError: List length (2) != rows*columns (4)
Here, an error is not raised because the list is not flat and no element is out of range:
>>> SparseMatrix(2, 2, [[1, 2]]) Matrix([ [1, 2], [0, 0]])
But adding another element to the first (and only) row will cause an error to be raised:
>>> SparseMatrix(2, 2, [[1, 2, 3]]) Traceback (most recent call last): ... ValueError: The location (0, 2) is out of designated range: (1, 1)
To autosize the matrix, pass None for rows:
>>> SparseMatrix(None, [[1, 2, 3]]) Matrix([[1, 2, 3]]) >>> SparseMatrix(None, {(1, 1): 1, (3, 3): 3}) Matrix([ [0, 0, 0, 0], [0, 1, 0, 0], [0, 0, 0, 0], [0, 0, 0, 3]])
Values that are themselves a Matrix are automatically expanded:
>>> SparseMatrix(4, 4, {(1, 1): ones(2)}) Matrix([ [0, 0, 0, 0], [0, 1, 1, 0], [0, 1, 1, 0], [0, 0, 0, 0]])
A ValueError is raised if the expanding matrix tries to overwrite a different element already present:
>>> SparseMatrix(3, 3, {(0, 0): ones(2), (1, 1): 2}) Traceback (most recent call last): ... ValueError: collision at (1, 1)
See Also ======== DenseMatrix MutableSparseMatrix ImmutableSparseMatrix """
@classmethod def _handle_creation_inputs(cls, *args, **kwargs): if len(args) == 1 and isinstance(args[0], MatrixBase): rows = args[0].rows cols = args[0].cols smat = args[0].todok() return rows, cols, smat
smat = {} # autosizing if len(args) == 2 and args[0] is None: args = [None, None, args[1]]
if len(args) == 3: r, c = args[:2] if r is c is None: rows = cols = None elif None in (r, c): raise ValueError( 'Pass rows=None and no cols for autosizing.') else: rows, cols = as_int(args[0]), as_int(args[1])
if isinstance(args[2], Callable): op = args[2]
if None in (rows, cols): raise ValueError( "{} and {} must be integers for this " "specification.".format(rows, cols))
row_indices = [cls._sympify(i) for i in range(rows)] col_indices = [cls._sympify(j) for j in range(cols)]
for i in row_indices: for j in col_indices: value = cls._sympify(op(i, j)) if value != cls.zero: smat[i, j] = value
return rows, cols, smat
elif isinstance(args[2], (dict, Dict)): def update(i, j, v): # update smat and make sure there are no collisions if v: if (i, j) in smat and v != smat[i, j]: raise ValueError( "There is a collision at {} for {} and {}." .format((i, j), v, smat[i, j]) ) smat[i, j] = v
# manual copy, copy.deepcopy() doesn't work for (r, c), v in args[2].items(): if isinstance(v, MatrixBase): for (i, j), vv in v.todok().items(): update(r + i, c + j, vv) elif isinstance(v, (list, tuple)): _, _, smat = cls._handle_creation_inputs(v, **kwargs) for i, j in smat: update(r + i, c + j, smat[i, j]) else: v = cls._sympify(v) update(r, c, cls._sympify(v))
elif is_sequence(args[2]): flat = not any(is_sequence(i) for i in args[2]) if not flat: _, _, smat = \ cls._handle_creation_inputs(args[2], **kwargs) else: flat_list = args[2] if len(flat_list) != rows * cols: raise ValueError( "The length of the flat list ({}) does not " "match the specified size ({} * {})." .format(len(flat_list), rows, cols) )
for i in range(rows): for j in range(cols): value = flat_list[i*cols + j] value = cls._sympify(value) if value != cls.zero: smat[i, j] = value
if rows is None: # autosizing keys = smat.keys() rows = max([r for r, _ in keys]) + 1 if keys else 0 cols = max([c for _, c in keys]) + 1 if keys else 0
else: for i, j in smat.keys(): if i and i >= rows or j and j >= cols: raise ValueError( "The location {} is out of the designated range" "[{}, {}]x[{}, {}]" .format((i, j), 0, rows - 1, 0, cols - 1) )
return rows, cols, smat
elif len(args) == 1 and isinstance(args[0], (list, tuple)): # list of values or lists v = args[0] c = 0 for i, row in enumerate(v): if not isinstance(row, (list, tuple)): row = [row] for j, vv in enumerate(row): if vv != cls.zero: smat[i, j] = cls._sympify(vv) c = max(c, len(row)) rows = len(v) if c else 0 cols = c return rows, cols, smat
else: # handle full matrix forms with _handle_creation_inputs rows, cols, mat = super()._handle_creation_inputs(*args) for i in range(rows): for j in range(cols): value = mat[cols*i + j] if value != cls.zero: smat[i, j] = value
return rows, cols, smat
@property def _smat(self):
sympy_deprecation_warning( """
The private _smat attribute of SparseMatrix is deprecated. Use the .todok() method instead. """,
deprecated_since_version="1.9", active_deprecations_target="deprecated-private-matrix-attributes" )
return self.todok()
def _eval_inverse(self, **kwargs): return self.inv(method=kwargs.get('method', 'LDL'), iszerofunc=kwargs.get('iszerofunc', _iszero), try_block_diag=kwargs.get('try_block_diag', False))
def applyfunc(self, f): """Apply a function to each element of the matrix.
Examples ========
>>> from sympy import SparseMatrix >>> m = SparseMatrix(2, 2, lambda i, j: i*2+j) >>> m Matrix([ [0, 1], [2, 3]]) >>> m.applyfunc(lambda i: 2*i) Matrix([ [0, 2], [4, 6]])
"""
if not callable(f): raise TypeError("`f` must be callable.")
# XXX: This only applies the function to the nonzero elements of the # matrix so is inconsistent with DenseMatrix.applyfunc e.g. # zeros(2, 2).applyfunc(lambda x: x + 1) dok = {} for k, v in self.todok().items(): fv = f(v) if fv != 0: dok[k] = fv
return self._new(self.rows, self.cols, dok)
def as_immutable(self): """Returns an Immutable version of this Matrix.""" from .immutable import ImmutableSparseMatrix return ImmutableSparseMatrix(self)
def as_mutable(self): """Returns a mutable version of this matrix.
Examples ========
>>> from sympy import ImmutableMatrix >>> X = ImmutableMatrix([[1, 2], [3, 4]]) >>> Y = X.as_mutable() >>> Y[1, 1] = 5 # Can set values in Y >>> Y Matrix([ [1, 2], [3, 5]]) """
return MutableSparseMatrix(self)
def col_list(self): """Returns a column-sorted list of non-zero elements of the matrix.
Examples ========
>>> from sympy import SparseMatrix >>> a=SparseMatrix(((1, 2), (3, 4))) >>> a Matrix([ [1, 2], [3, 4]]) >>> a.CL [(0, 0, 1), (1, 0, 3), (0, 1, 2), (1, 1, 4)]
See Also ========
sympy.matrices.sparse.SparseMatrix.row_list """
return [tuple(k + (self[k],)) for k in sorted(list(self.todok().keys()), key=lambda k: list(reversed(k)))]
def nnz(self): """Returns the number of non-zero elements in Matrix.""" return len(self.todok())
def row_list(self): """Returns a row-sorted list of non-zero elements of the matrix.
Examples ========
>>> from sympy import SparseMatrix >>> a = SparseMatrix(((1, 2), (3, 4))) >>> a Matrix([ [1, 2], [3, 4]]) >>> a.RL [(0, 0, 1), (0, 1, 2), (1, 0, 3), (1, 1, 4)]
See Also ========
sympy.matrices.sparse.SparseMatrix.col_list """
return [tuple(k + (self[k],)) for k in sorted(self.todok().keys(), key=list)]
def scalar_multiply(self, scalar): "Scalar element-wise multiplication" return scalar * self
def solve_least_squares(self, rhs, method='LDL'): """Return the least-square fit to the data.
By default the cholesky_solve routine is used (method='CH'); other methods of matrix inversion can be used. To find out which are available, see the docstring of the .inv() method.
Examples ========
>>> from sympy import SparseMatrix, Matrix, ones >>> A = Matrix([1, 2, 3]) >>> B = Matrix([2, 3, 4]) >>> S = SparseMatrix(A.row_join(B)) >>> S Matrix([ [1, 2], [2, 3], [3, 4]])
If each line of S represent coefficients of Ax + By and x and y are [2, 3] then S*xy is:
>>> r = S*Matrix([2, 3]); r Matrix([ [ 8], [13], [18]])
But let's add 1 to the middle value and then solve for the least-squares value of xy:
>>> xy = S.solve_least_squares(Matrix([8, 14, 18])); xy Matrix([ [ 5/3], [10/3]])
The error is given by S*xy - r:
>>> S*xy - r Matrix([ [1/3], [1/3], [1/3]]) >>> _.norm().n(2) 0.58
If a different xy is used, the norm will be higher:
>>> xy += ones(2, 1)/10 >>> (S*xy - r).norm().n(2) 1.5
"""
t = self.T return (t*self).inv(method=method)*t*rhs
def solve(self, rhs, method='LDL'): """Return solution to self*soln = rhs using given inversion method.
For a list of possible inversion methods, see the .inv() docstring. """
if not self.is_square: if self.rows < self.cols: raise ValueError('Under-determined system.') elif self.rows > self.cols: raise ValueError('For over-determined system, M, having ' 'more rows than columns, try M.solve_least_squares(rhs).') else: return self.inv(method=method).multiply(rhs)
RL = property(row_list, None, None, "Alternate faster representation") CL = property(col_list, None, None, "Alternate faster representation")
def liupc(self): return _liupc(self)
def row_structure_symbolic_cholesky(self): return _row_structure_symbolic_cholesky(self)
def cholesky(self, hermitian=True): return _cholesky_sparse(self, hermitian=hermitian)
def LDLdecomposition(self, hermitian=True): return _LDLdecomposition_sparse(self, hermitian=hermitian)
def lower_triangular_solve(self, rhs): return _lower_triangular_solve_sparse(self, rhs)
def upper_triangular_solve(self, rhs): return _upper_triangular_solve_sparse(self, rhs)
liupc.__doc__ = _liupc.__doc__ row_structure_symbolic_cholesky.__doc__ = _row_structure_symbolic_cholesky.__doc__ cholesky.__doc__ = _cholesky_sparse.__doc__ LDLdecomposition.__doc__ = _LDLdecomposition_sparse.__doc__ lower_triangular_solve.__doc__ = lower_triangular_solve.__doc__ upper_triangular_solve.__doc__ = upper_triangular_solve.__doc__
class MutableSparseMatrix(SparseRepMatrix, MutableRepMatrix):
@classmethod def _new(cls, *args, **kwargs): rows, cols, smat = cls._handle_creation_inputs(*args, **kwargs)
rep = cls._smat_to_DomainMatrix(rows, cols, smat)
return cls._fromrep(rep)
SparseMatrix = MutableSparseMatrix
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