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import shutil from sympy.external import import_module from sympy.testing.pytest import skip
from sympy.utilities._compilation.compilation import compile_link_import_strings from sympy.utilities._compilation.util import may_xfail
numpy = import_module('numpy') cython = import_module('cython')
_sources1 = [ ('sigmoid.c', r"""
#include <math.h>
void sigmoid(int n, const double * const restrict in, double * const restrict out, double lim){ for (int i=0; i<n; ++i){ const double x = in[i]; out[i] = x*pow(pow(x/lim, 8)+1, -1./8.); } } """),
('_sigmoid.pyx', r"""
import numpy as np cimport numpy as cnp
cdef extern void c_sigmoid "sigmoid" (int, const double * const, double * const, double)
def sigmoid(double [:] inp, double lim=350.0): cdef cnp.ndarray[cnp.float64_t, ndim=1] out = np.empty( inp.size, dtype=np.float64) c_sigmoid(inp.size, &inp[0], &out[0], lim) return out """)
]
def npy(data, lim=350.0): return data/((data/lim)**8+1)**(1/8.)
@may_xfail def test_compile_link_import_strings(): if not numpy: skip("numpy not installed.") if not cython: skip("cython not installed.")
from sympy.utilities._compilation import has_c if not has_c(): skip("No C compiler found.")
compile_kw = dict(std='c99', include_dirs=[numpy.get_include()]) info = None try: mod, info = compile_link_import_strings(_sources1, compile_kwargs=compile_kw) data = numpy.random.random(1024*1024*8) # 64 MB of RAM needed.. res_mod = mod.sigmoid(data) res_npy = npy(data) assert numpy.allclose(res_mod, res_npy) finally: if info and info['build_dir']: shutil.rmtree(info['build_dir'])
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